PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG050500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 550aa    MW: 58225.7 Da    PI: 4.3168
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG050500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.1e-13295338755
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +ErrRR+++N+++ +Lr+l+P+      +K++ a+iL  A++YI  Lq
  Pavir.1NG050500.1.p 295 VAERRRRKKLNDRLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 338
                          58*********************7.....7***************9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.77E-18286349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.974288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-16294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16295349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10295338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.88E-13295342No hitNo description
CDDcd048730.00209422486No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MEGGDHRCMA AAAGDGGASV ESALRPLVGA DAWDYCIYWR LSPDQRFLEM TGFCCSSEFE  60
AQISALGELP SSIPLDSSSA GMHAEAMLSN QPIWQTSCVS ELPASYSSEH ASGGPRTRLL  120
VPVAGGLVEL FAARYMAEEE QMAELVMAQC GVPARAGDGE GNEGGVVHSW PEAPGFAWDG  180
AAADPQRMYA AVPSLNLFDA AGDVAADSFL AAAPGVVDDA AAAGWQYAAA AGSEPSVVAV  240
QQEQPQQLHG AAARAGGADS GSEGSDIQGD PEDDGDGDAQ GRGGGGKRQQ CKNLVAERRR  300
RKKLNDRLYK LRSLVPNITK MDRASILGDA IDYIVGLQNQ VKALQDELED PADGVPDVLL  360
DHPPPASLVG LENDDSPRTS LHQPAAPLAG NKRPRAAAEE DKGHDMEPQV EVRQVEANEF  420
FLQVLCEHKP GRFVRLMDAV NALGLEVTNV NVTSYKTLVL NVFRVVRRDN EVSVQADRVR  480
DSLLEVTRES YGVWSSAPPV GSGGADAKLE GVDVKLEGVD VKLDGVDAQA QAAVEDHYGS  540
YNHLLQYLA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296303ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0343260.0BT034326.1 Zea mays full-length cDNA clone ZM_BFc0007A07 mRNA, complete cds.
GenBankBT0427910.0BT042791.1 Zea mays full-length cDNA clone ZM_BFc0041J08 mRNA, complete cds.
GenBankBT0630100.0BT063010.2 Zea mays full-length cDNA clone ZM_BFc0017C04 mRNA, complete cds.
GenBankBT0631180.0BT063118.1 Zea mays full-length cDNA clone ZM_BFc0027J15 mRNA, complete cds.
GenBankBT0657170.0BT065717.1 Zea mays full-length cDNA clone ZM_BFc0042K04 mRNA, complete cds.
GenBankBT0677850.0BT067785.1 Zea mays full-length cDNA clone ZM_BFc0159F07 mRNA, complete cds.
GenBankBT0688360.0BT068836.1 Zea mays full-length cDNA clone ZM_BFc0079O03 mRNA, complete cds.
GenBankBT0880900.0BT088090.1 Zea mays full-length cDNA clone ZM_BFc0009P17 mRNA, complete cds.
GenBankBT0882990.0BT088299.1 Zea mays full-length cDNA clone ZM_BFc0123M15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700934.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2
RefseqXP_012700935.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2
RefseqXP_012700936.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2
RefseqXP_012700937.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2
SwissprotQ6YUS30.0TDR_ORYSJ; Transcription factor TDR
TrEMBLK3XW910.0K3XW91_SETIT; Uncharacterized protein
STRINGSi006199m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55303449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.15e-57bHLH family protein